miranda_sponge_predict | R Documentation |
Transforms miRanda data into adjacency matrix, with 1 indicating presence of a relationship between a mRNA and miRNA, and 0 otherwise. miRanda input is filtered by miRNA and mRNA present in 'mirna_exp' and 'diff_expr' row names, respectively.
miranda_sponge_predict(mirna_exp, diff_exp, miranda_data)
mirna_exp |
miRna expression data.frame with miRNA for rows and samples for columns |
diff_exp |
mRNA expression data.frame with mRNA for rows and samples for columns |
miranda_data |
miRanda data.frame with the first two columns having miRNA and mRNA names |
matrix adjacency matrix with column names miRNA and row names mRNA
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