miranda_sponge_predict: Transform miRanda data for relevant mRNA and miRNA to matrix...

View source: R/sponge.R

miranda_sponge_predictR Documentation

Transform miRanda data for relevant mRNA and miRNA to matrix form compatible with sponge

Description

Transforms miRanda data into adjacency matrix, with 1 indicating presence of a relationship between a mRNA and miRNA, and 0 otherwise. miRanda input is filtered by miRNA and mRNA present in 'mirna_exp' and 'diff_expr' row names, respectively.

Usage

miranda_sponge_predict(mirna_exp, diff_exp, miranda_data)

Arguments

mirna_exp

miRna expression data.frame with miRNA for rows and samples for columns

diff_exp

mRNA expression data.frame with mRNA for rows and samples for columns

miranda_data

miRanda data.frame with the first two columns having miRNA and mRNA names

Value

matrix adjacency matrix with column names miRNA and row names mRNA


Mercedeh66/mirTarRnaSeq documentation built on April 14, 2023, 6:49 a.m.