miranda_sponge_predict: Transform miRanda data for relevant mRNA and miRNA to matrix...
In Mercedeh66/mirTarRnaSeq: mirTarRnaSeq
miranda_sponge_predict R Documentation
Transform miRanda data for relevant mRNA and miRNA to matrix form compatible with sponge
Description
Transforms miRanda data into adjacency matrix, with 1 indicating
presence of a relationship between a mRNA and miRNA, and 0
otherwise. miRanda input is filtered by miRNA and mRNA present in
'mirna_exp' and 'diff_expr' row names, respectively.
Usage
miranda_sponge_predict(mirna_exp, diff_exp, miranda_data)
Arguments
mirna_exp
miRna expression data.frame with miRNA for rows and samples for columns
diff_exp
mRNA expression data.frame with mRNA for rows and samples for columns
miranda_data
miRanda data.frame with the first two columns having miRNA and mRNA names
Value
matrix adjacency matrix with column names miRNA and row names mRNA
Mercedeh66/mirTarRnaSeq documentation built on April 14, 2023, 6:49 a.m.
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| miranda_sponge_predict | R Documentation |
Transform miRanda data for relevant mRNA and miRNA to matrix form compatible with sponge
Description
Transforms miRanda data into adjacency matrix, with 1 indicating presence of a relationship between a mRNA and miRNA, and 0 otherwise. miRanda input is filtered by miRNA and mRNA present in 'mirna_exp' and 'diff_expr' row names, respectively.
Usage
miranda_sponge_predict(mirna_exp, diff_exp, miranda_data)
Arguments
mirna_exp |
miRna expression data.frame with miRNA for rows and samples for columns |
diff_exp |
mRNA expression data.frame with mRNA for rows and samples for columns |
miranda_data |
miRanda data.frame with the first two columns having miRNA and mRNA names |
Value
matrix adjacency matrix with column names miRNA and row names mRNA
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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