Man pages for Michael-Stevens-27/silverblaze
Geographic Profiling in R
| bearing_to_lonlat | Get spatial coordinate given an origin, a great circle... |
| bind_data | Bind data to project |
| check_silverblaze_loaded | Check that silverblaze package has loaded successfully |
| delete_set | Delete parameter set |
| dispersal_sphere | Draw from spherical distribution |
| dist_gc | Calculate pairwise great circle distance between points |
| get_hitscores | Get hitscores |
| get_output | Get specified output from project |
| gini | Calculate Gini coefficient |
| is.rgeoprofile_project | Determine if object is of class rgeoprofile_project |
| kernel_smooth | Produce a smooth surface using 2D kernel density smoothing |
| lonlat_to_bearing | Calculate great circle distance and bearing between... |
| lonlat_to_cartesian | Convert lon/lat to cartesian coordinates |
| more_colours | Expand series of colours by interpolation |
| new_set | Create new parameter set |
| optimise_beta | Optimise beta values for MCMC rungs |
| overlay_geoprofile | Add geoprofile to dynamic map |
| overlay_piecharts | Add pie charts to dynamic map |
| overlay_points | Add points to dynamic map |
| overlay_ringsearch | Add ring-search geoprofile to dynamic map |
| overlay_risk_map | Add risk surface to dynamic map |
| overlay_sentinels | Add sentinel sites to dynamic map |
| overlay_sources | Add sources to dynamic map |
| overlay_spatial_prior | Add spatial prior to dynamic map |
| overlay_surface | Add posterior probability surface to dynamic map |
| overlay_trial_sites | Add trial sites to dynamic map |
| plot_acf | Produce MCMC autocorrelation plot |
| plot_alpha | Plot alpha 95% credible intervals |
| plot_coupling | Plot acceptance rate between rungs |
| plot_density | Produce MCMC density plot |
| plot_DIC_gelman | Plot DIC over all K |
| plot_expected_popsize | Plot expected population size 95% credible intervals |
| plot_loglike | Plot loglikelihood 95% credible intervals |
| plot_loglike_diagnostic | Produce diagnostic plots of log-likelihood |
| plot_lorenz | Produce Lorenz plot of hitscores |
| plot_map | Create dynamic map |
| plot_sigma | Plot sigma 95% credible intervals |
| plot_structure | Posterior allocation plot |
| plot_trace | Produce MCMC trace plot |
| print_full | Ordinary print function for class rgeoprofile_project |
| raster_from_shapefile | Make raster from shapefile |
| raster_grid | Make raster grid |
| realised_sources | Calculate realised sources |
| rgeoprofile_file | Import file |
| rgeoprofile_project | Create a new RgeoProfile project |
| rgeoprofile_shapefile | Import shapefile |
| run_mcmc | Run main MCMC |
| silverblaze | Bayesian Geographic Profiling from Presence-Absence Data |
| sim_data | Simulate data |
