Create a new parameter set within an rgeoprofile_project
. The new
parameter set becomes the active set once created.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 | new_set(
project,
spatial_prior = NULL,
source_model = "uniform",
name = "(no name)",
sigma_model = "single",
dispersal_model = "normal",
sigma_prior_mean = 1,
sigma_prior_sd = 1,
expected_popsize_model = "single",
expected_popsize_prior_mean = 1000,
expected_popsize_prior_sd = 20,
sentinel_radius = 0.2,
n_binom = FALSE,
alpha_prior_mean = 1,
alpha_prior_sd = 100,
weight_prior = 1
)
|
project |
an rgeoprofile_project, as produced by the function
|
spatial_prior |
a raster file defining the spatial prior. Precision values are taken from this raster if it is defined. |
source_model |
choose prior type for source locations. Pick from "uniform" (default), "normal" (bivariate normal), "kernel" (KDE based on positive data) or "manual" (the current value of the raster) |
name |
an optional name for the parameter set. |
sigma_model |
set as |
dispersal_model |
distribute points via a "normal", "cauchy" or "laplace" model |
sigma_prior_mean |
the prior mean of the parameter sigma (km). |
sigma_prior_sd |
the prior standard deviation of the parameter sigma
(km). Set to 0 to use a fixed value for sigma (fixed at
|
expected_popsize_model |
set as |
expected_popsize_prior_mean |
the prior mean of the expected total population size. |
expected_popsize_prior_sd |
the prior standard deviation of the expected
total population size. Set to 0 to use a fixed value (fixed at
|
sentinel_radius |
the observation radius of sentinel sites. |
n_binom |
set to true or false, decide if a negative binomial model should be run for a set of over-dispersed count data. |
alpha_prior_mean |
the prior mean alpha. |
alpha_prior_sd |
the prior standard deviation of alpha. |
weight_prior |
control the prior on weights for a point-pattern model |
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