bearing_to_lonlat | Get spatial coordinate given an origin, a great circle... |
bind_data | Bind data to project |
check_silverblaze_loaded | Check that silverblaze package has loaded successfully |
delete_set | Delete parameter set |
dispersal_sphere | Draw from spherical distribution |
dist_gc | Calculate pairwise great circle distance between points |
get_hitscores | Get hitscores |
get_output | Get specified output from project |
gini | Calculate Gini coefficient |
is.rgeoprofile_project | Determine if object is of class rgeoprofile_project |
kernel_smooth | Produce a smooth surface using 2D kernel density smoothing |
lonlat_to_bearing | Calculate great circle distance and bearing between... |
lonlat_to_cartesian | Convert lon/lat to cartesian coordinates |
more_colours | Expand series of colours by interpolation |
new_set | Create new parameter set |
optimise_beta | Optimise beta values for MCMC rungs |
overlay_geoprofile | Add geoprofile to dynamic map |
overlay_piecharts | Add pie charts to dynamic map |
overlay_points | Add points to dynamic map |
overlay_ringsearch | Add ring-search geoprofile to dynamic map |
overlay_risk_map | Add risk surface to dynamic map |
overlay_sentinels | Add sentinel sites to dynamic map |
overlay_sources | Add sources to dynamic map |
overlay_spatial_prior | Add spatial prior to dynamic map |
overlay_surface | Add posterior probability surface to dynamic map |
overlay_trial_sites | Add trial sites to dynamic map |
plot_acf | Produce MCMC autocorrelation plot |
plot_alpha | Plot alpha 95% credible intervals |
plot_coupling | Plot acceptance rate between rungs |
plot_density | Produce MCMC density plot |
plot_DIC_gelman | Plot DIC over all K |
plot_expected_popsize | Plot expected population size 95% credible intervals |
plot_loglike | Plot loglikelihood 95% credible intervals |
plot_loglike_diagnostic | Produce diagnostic plots of log-likelihood |
plot_lorenz | Produce Lorenz plot of hitscores |
plot_map | Create dynamic map |
plot_sigma | Plot sigma 95% credible intervals |
plot_structure | Posterior allocation plot |
plot_trace | Produce MCMC trace plot |
print_full | Ordinary print function for class rgeoprofile_project |
raster_from_shapefile | Make raster from shapefile |
raster_grid | Make raster grid |
realised_sources | Calculate realised sources |
rgeoprofile_file | Import file |
rgeoprofile_project | Create a new RgeoProfile project |
rgeoprofile_shapefile | Import shapefile |
run_mcmc | Run main MCMC |
silverblaze | Bayesian Geographic Profiling from Presence-Absence Data |
sim_data | Simulate data |
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