Description Usage Arguments Details
Run the main geographic profiling MCMC. Model parameters are taken from the current active parameter set, and MCMC parameters are passed in as arguments. All output is stored within the project.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 |
project |
an rgeoprofile_project, as produced by the function
|
K |
the number of sources. |
burnin |
the number of burn-in iterations. |
samples |
the number of sampling iterations. |
auto_converge |
whether convergence should be assessed automatically
every |
converge_test |
test for convergence every |
coupling_on |
whether to implement Metropolis coupling. |
cluster |
option to pass in a cluster environment (see package "parallel"). |
pb_markdown |
whether to run progress bars in markdown mode, in which case they are updated once at the end to avoid large amounts of output. |
store_raw |
whether to store raw MCMC output in addition to summary output. Setting to FALSE can considerably reduce output size in memory. |
create_maps |
whether to create maps of posterior probability and geoprofile. Usually will want to create these maps, but the code runs much faster without this step, hence the option. |
silent |
whether to suppress all console output. |
beta_manual |
allows manual specification of thermodynamic powers used. |
rung_store |
Pick a rung whose output will be stored |
Both longitude and latitude values can be represented to a given
precision level using the arguments precision_lon
and
precision_lat
- for example, a precision of 0.01 means that values
are rounded to the nearest hundredth of a degree. This allows the use of
look-up tables for the likelihood calculation, which significantly speeds
up the MCMC. Set to 0 to use exact values (up to C++ "double" precision)
rather than using look-up tables.
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