Files in Michorlab/ACESO
A Cancer Evolution Simulation Optimizer
.Rbuildignore
.gitignore
ACESO.Rproj
DESCRIPTION
LICENSE
NAMESPACE
R/ACESO.R
R/EN_type0_cells.R
R/En_resistant_cells.R
R/En_resistant_cells_i.R
R/General_functions_u.R
R/HSA.R
R/Loewe.R
R/PK.R
R/Prob_developing_resistance.R
R/Probability_extinction.R
R/Response_surface.R
R/calculate_death_rate.R
R/cross_resistance.R
R/datasets.R
R/dose_response_fitting.R
R/model_library.R
R/net_growth_rate.R
R/predict_response.R
R/read.cellcount.data.R
R/response_surface_fit.R
README.md
README/000003.png
README/000004.png
README/000005.png
README/000006.png
README/000007.png
README/000008.png
README/000009.png
README/000010.png
README/000011.png
README/000012.png
README/000013.png
README/000014.png
README/2type_branching.jpg
README/diagram.png
README/viability-1.png
data/AU565_dataset.rda
data/Alpelisib_Trametinib_combination.rda
data/Alpelisib_sensitive.rda
data/Dactolisib_Trametinib_combination.rda
data/Dactolisib_Trametinib_rates.rda
data/PK.example.rda
data/Trametinib_sensitive.rda
inst/PK_models/1cmt_2depot.cpp
inst/PK_models/1cmt_ev.cpp
inst/PK_models/1cmt_iv.cpp
inst/PK_models/2cmt_2depot.cpp
inst/PK_models/2cmt_ev.cpp
inst/PK_models/2cmt_iv.cpp
inst/PK_models/3cmt_ev.cpp
inst/PK_models/3cmt_iv.cpp
inst/extdata/2cell_lines.txt
inst/extdata/apoptosis_assay.txt
inst/extdata/cell_viability_assay.txt
man/ACESO.Rd
man/AU565_dataset.Rd
man/Alpelisib_Trametinib_combination.Rd
man/Alpelisib_sensitive.Rd
man/Dactolisib_Trametinib_combination.Rd
man/DifferenceSurface.plot.Rd
man/EN_type0_cells.Rd
man/En_crossresistant_cells_i.Rd
man/En_resistant_cells.Rd
man/En_resistant_cells_i.Rd
man/Estimate.PK.Rd
man/GD.Rd
man/HSA.Rd
man/Loewe.Rd
man/Multiple.best.singlefit.Rd
man/Multiple.resp.surface.fit.Rd
man/Multiple.singlefit.Rd
man/PK.example.Rd
man/Pext.Rd
man/Pext_preexisting_resist.Rd
man/Prob_resistance.Rd
man/ResponseSurface.plot.Rd
man/SynergyMatrix.plot.Rd
man/Trametinib_sensitive.Rd
man/best.singlefit.Rd
man/calculate_death_rate.Rd
man/curve.fit.Rd
man/define.Type0.cells.Rd
man/define.Typei.cells.Rd
man/define.Typeicr.cells.Rd
man/easy.mrgsim.Rd
man/linear.fit.Rd
man/model.select.Rd
man/model_library.Rd
man/modelfit.plot.Rd
man/net_growth_rate.Rd
man/pk.function.Rd
man/read.PKdata.Rd
man/read.cellcount.data.Rd
man/read.celldeath.file.Rd
man/resp.surface.fit.Rd
man/responseMap.Rd
man/try.loewe.Rd
vignettes/2type_branching.jpg
vignettes/3type_branching.jpg
vignettes/Synergy_assesment.Rmd
vignettes/Three_type_branching_process.Rmd
vignettes/Two_type_branching_process.Rmd
vignettes/complex_dosing_schedules.Rmd
vignettes/diagram.png
