DifferenceSurface.plot: DifferenceSurface.plot

In Michorlab/ACESO: A Cancer Evolution Simulation Optimizer

Description

DifferenceSurface.plot

Usage

DifferenceSurface.plot(rmap, zcenter = NULL, xl = expression(CONC),
  yl = expression(CONC2), zl = "Effect", low = "#e9a3c9",
  mid = "#f7f7f7", high = "#4dac26", title = "")

Arguments

rmap	a ggplot2 plot object depicting a response map, produced by the function responseMap.
zcenter	the value that forms the centerpoint (white) in the bidirectional color scale. If NULL (the default), the default setting for scale_fill_gradient2 is used.
xl	The character string or expression used to label the x-axis
yl	The character string or expression used to label the y-axis
zl	The character string or expression used to label the colorscale representing the response variable. "Effect" by default.
low	character corresponding to the color selected for the lowest values in the response map.
mid	color for the mid point.
high	character corresponding to the color selected for the highest values in the response map.
title	title for the plot

Value

A ggplot2 plot object, with the appropriate scales and labels added.

See Also

braidReports::responseMap

Examples

## Not run: 
data(Dactolisib_Trametinib_combination)
growth_data<-net_growth_rate(Dactolisib_Trametinib_combination)
GD=growth_data[,c('Cell.line','CONC','CONC2','Net_growth','Type','Birth_rate','Death_rate')]
GD=unique(GD)
rmap <- braidReports::responseMap(Net_growth~CONC+CONC2,GD,logscale=T,interpolate=FALSE)
DifferenceSurface.plot(rmap,zcenter=0.01,xl=expression(paste("[Dactolisib] (",mu,"M)", sep="")),
yl=expression(paste("[Trametinib] (",mu,"M)", sep="")),
zl="Net growth rate of \n sensitive cells",
mid="yellow",low="hotpink1",high="darkturquoise")


## End(Not run)

Michorlab/ACESO documentation built on June 4, 2021, 4:57 p.m.