SynergyMatrix.plot: Colored concentration pairwise synergy matrix

In Michorlab/ACESO: A Cancer Evolution Simulation Optimizer

Description

Colored concentration pairwise synergy matrix

Usage

SynergyMatrix.plot(data, resp = "diffLoewe", conc1 = "CONC",
  conc2 = "CONC2")

Arguments

data	input data
resp	Name of the column in the dataset with the effect/response to be fitted.
conc1	Name of the column in the dataset with the concentrations for drug 1. 'CONC' by default.
conc2	Name of the column in the dataset with the concentrations for drug 1. 'CONC2' by default.

Value

Colored concentration pairwise matrix reflecting the difference between the measurement and the surface obtained under a no-interaction model. Values less than zero (blue) represent antagonism and values greater that zero (yellow) represent synergism.

Examples

## Not run: 
data(Dactolisib_Trametinib_rates)
head(GD)
GD=Loewe(data=GD,resp = 'Birth_rate')
GD$diffLoewe=(GD$loewe_additivity-GD$Birth_rate)
SynergyMatrix.plot(GD, resp="diffLoewe")

## End(Not run)

Michorlab/ACESO documentation built on June 4, 2021, 4:57 p.m.