HSA: Fill the dataset with the predicted effect under Highest...

Description Usage Arguments Value Examples

View source: R/HSA.R

Description

Fill the dataset with the predicted effect under Highest Single Agent (HSA) model

Usage

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HSA(data, resp = "Birth_rate", conc1 = "CONC", conc2 = "CONC2",
  Emax.effect = c("min", "max"))

Arguments

data

input dataset

resp

Name of the column in the dataset with the effect/response to be fitted.

conc1

Name of the column in the dataset with the concentrations for drug 1. 'CONC' by default.

conc2

Name of the column in the dataset with the concentrations for drug 1. 'CONC2' by default.

Emax.effect

argument to indicate whether the maximum effect of the drug in the dataset is associated with the minimum or the maximum values of the resp column.

Value

The input dataset with a new column called 'HSA_response' to store the expected effect of combination under HSA model

Examples

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## Not run: 
data(Dactolisib_Trametinib_rates)
head(GD)
GD=HSA(GD,resp='Birth_rate',conc1='CONC',conc2='CONC2')
head(GD)
rmap <- braidReports::responseMap(HSA_response~CONC+CONC2,GD,logscale=T)
plot.ResponseSurface(rmap,xl="[Dactolisib] (µM)",yl="[Trametinib] (µM)",
zl="Birth rate of \n sensitive cells (1/h)",title="HSA")

## End(Not run)

Michorlab/ACESO documentation built on June 4, 2021, 4:57 p.m.