ResponseSurface.plot: ResponseSurface.plot

In Michorlab/ACESO: A Cancer Evolution Simulation Optimizer

Description

ResponseSurface.plot

Usage

ResponseSurface.plot(rmap, palette = NULL, cscale = NULL,
  xl = expression(CONC), yl = expression(CONC2), zl = "Effect",
  title = "")

Arguments

rmap	a ggplot2 plot object depicting a response map, produced by the function responseMap.
palette	a character vector or two or more colors defining the colorscale to be applied to the fill variable in the plot.
cscale	a value around which the colorscale applied to the fill variable will be centered. If NULL (the default), the colorscale will range from the minimum fill variable to the maximum.
xl	The character string or expression used to label the x-axis
yl	The character string or expression used to label the y-axis
zl	The character string or expression used to label the colorscale representing the response variable. "Effect" by default.
title	title for the plot

Value

A ggplot2 plot object, with the appropriate scales and labels added.

See Also

braidReports::responseMap

Examples

## Not run: 
data(Dactolisib_Trametinib_combination)
growth_data<-net_growth_rate(Dactolisib_Trametinib_combination)
rmap <- braidReports::responseMap(Net_growth~CONC+CONC2,GD,logscale=T)

ResponseSurface.plot(rmap,xl=expression(paste("[Dactolisib] (",mu,"M)", sep="")),
                    yl=expression(paste("[Trametinib] (",mu,"M)", sep="")),
                    zl="Net growth rate of \n sensitive cells",
                   palette=c("hotpink1","yellow","darkturquoise"))

## End(Not run)

Michorlab/ACESO documentation built on June 4, 2021, 4:57 p.m.