Milo performs singlecell differential abundance testing. Cell states are modelled as representative neighbourhoods on a nearest neighbour graph. Hypothesis testing is performed using either a negative bionomial generalized linear model or negative binomial generalized linear mixed model.
Package details 


Bioconductor views  FunctionalGenomics MultipleComparison SingleCell Software 
Maintainer  
License  GPL3 + file LICENSE 
Version  2.0.1 
URL  https://marionilab.github.io/miloR 
Package repository  View on GitHub 
Installation 
Install the latest version of this package by entering the following in R:

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