MikeDMorgan/miloR: Differential neighbourhood abundance testing on a graph

Milo performs single-cell differential abundance testing. Cell states are modelled as representative neighbourhoods on a nearest neighbour graph. Hypothesis testing is performed using a negative bionomial generalized linear model.

Getting started

Package details

Bioconductor views FunctionalGenomics MultipleComparison SingleCell Software
Maintainer
LicenseGPL-3 + file LICENSE
Version1.5.0
URL https://marionilab.github.io/miloR
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("MikeDMorgan/miloR")
MikeDMorgan/miloR documentation built on May 2, 2022, 1:59 p.m.