API for MikeDMorgan/miloR
Differential neighbourhood abundance testing on a graph

Global functions
.aggregate_dists Source code
.aggregate_dists.hard Source code
.buildGraph Source code
.build_nhood_adjacency Source code
.calc_distance Source code
.calc_expression Source code
.check_binary Source code
.check_empty Source code
.emptyMilo Source code
.fromSCE Source code
.graph_refined_sampling Source code
.group_nhoods_by_overlap Source code
.group_nhoods_from_adjacency Source code
.milo_show Source code
.neighborsToKNNGraph Source code
.perform_counts_dge Source code
.perform_lognormal_dge Source code
.refined_sampling Source code
.sample_vertices Source code
.set_reduced_dims Source code
.setup_knn_data Source code
.valid_graph Source code
.valid_nhood Source code
Milo Man page Source code
Milo-class Man page
Milo-methods Man page
annotateNhoods Man page Source code
buildFromAdjacency Man page Source code
buildGraph Man page Source code
buildNhoodGraph Man page Source code
calcNhoodDistance Man page Source code
calcNhoodExpression Man page Source code
countCells Man page Source code
findNhoodGroupMarkers Man page Source code
findNhoodMarkers Man page Source code
graph Man page
graph,Milo-method Man page
graph<- Man page
graph<-,Milo-method Man page
graphSpatialFDR Man page Source code
groupNhoods Man page Source code
makeNhoods Man page Source code
matrixORMatrix-class Man page
miloR-package Man page
nhoodAdjacency Man page
nhoodAdjacency,Milo-method Man page
nhoodAdjacency<- Man page
nhoodAdjacency<-,Milo-method Man page
nhoodCounts Man page
nhoodCounts,Milo-method Man page
nhoodCounts<- Man page
nhoodCounts<-,Milo-method Man page
nhoodDistances Man page
nhoodDistances,Milo-method Man page
nhoodDistances<- Man page
nhoodDistances<-,Milo-method Man page
nhoodExpression Man page
nhoodExpression,Milo-method Man page
nhoodExpression<- Man page
nhoodExpression<-,Milo-method Man page
nhoodGraph Man page
nhoodGraph,Milo-method Man page
nhoodGraph<- Man page
nhoodGraph<-,Milo-method Man page
nhoodIndex Man page
nhoodIndex,Milo-method Man page
nhoodIndex<- Man page
nhoodIndex<-,Milo-method Man page
nhoodReducedDim Man page
nhoodReducedDim,Milo-method Man page
nhoodReducedDim<- Man page
nhoodReducedDim<-,Milo-method Man page
nhoods Man page
nhoods,Milo-method Man page
nhoods<- Man page
nhoods<-,Milo-method Man page
plotDAbeeswarm Man page
plotNhoodExpressionDA Man page Source code
plotNhoodExpressionGroups Man page
plotNhoodGraph Man page Source code
plotNhoodGraphDA Man page Source code
plotNhoodGroups Man page Source code
plotNhoodMA Man page
plotNhoodSizeHist Man page Source code
show Man page
show,Milo-method Man page
sim_discrete Man page
sim_trajectory Man page
testDiffExp Man page Source code
testNhoods Man page Source code
MikeDMorgan/miloR documentation built on Aug. 7, 2022, 8:21 a.m.