Files in MikeDMorgan/miloR
Differential neighbourhood abundance testing on a graph

.Rbuildignore
.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/RCMD_check.yml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/AllClasses.R R/AllGenerics.R R/annotateNhoods.R R/buildFromAdjacency.R R/buildGraph.R R/buildNhoodGraph.R R/calcNhoodDistance.R R/calcNhoodExpression.R R/countCells.R R/findNhoodGroupMarkers.R R/findNhoodMarkers.R R/graphSpatialFDR.R R/groupNhoods.R R/makeNhoods.R R/methods.R R/milo.R R/miloR-package.R R/plotNhoods.R R/sim_discrete.R R/sim_trajectory.R R/testDiffExp.R R/testNhoods.R R/utils.R README.md
_pkgdown.yml
codecov.yml
data/sim_discrete.RData
data/sim_trajectory.RData
docs/404.html
docs/articles/index.html
docs/articles/milo_demo.html
docs/articles/milo_demo_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/milo_demo_files/figure-html/unnamed-chunk-16-1.png
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docs/articles/milo_demo_files/header-attrs-2.3/header-attrs.js
docs/articles/milo_gastrulation.html
docs/articles/milo_gastrulation_files/accessible-code-block-0.0.1/empty-anchor.js
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docs/articles/milo_gastrulation_files/header-attrs-2.3/header-attrs.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/milo_schematic.png
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Milo.html
docs/reference/annotateNhoods.html
docs/reference/buildFromAdjacency.html
docs/reference/buildGraph.html
docs/reference/buildNhoodGraph.html
docs/reference/calcNhoodDistance.html
docs/reference/calcNhoodExpression.html
docs/reference/countCells.html
docs/reference/findNhoodMarkers.html
docs/reference/graphSpatialFDR.html
docs/reference/index.html
docs/reference/makeNhoods.html
docs/reference/matrixORMatrix-class.html
docs/reference/methods.html
docs/reference/plotDAbeeswarm.html
docs/reference/plotNhoodExpressionDA.html
docs/reference/plotNhoodGraph.html
docs/reference/plotNhoodGraphDA.html
docs/reference/plotNhoodSizeHist-1.png
docs/reference/plotNhoodSizeHist.html
docs/reference/sim_discrete.html
docs/reference/sim_trajectory.html
docs/reference/testDiffExp.html
docs/reference/testNhoods.html
man/Milo.Rd man/annotateNhoods.Rd man/buildFromAdjacency.Rd man/buildGraph.Rd man/buildNhoodGraph.Rd man/calcNhoodDistance.Rd man/calcNhoodExpression.Rd man/countCells.Rd man/findNhoodGroupMarkers.Rd man/findNhoodMarkers.Rd man/graphSpatialFDR.Rd man/groupNhoods.Rd man/makeNhoods.Rd man/matrixORMatrix-class.Rd man/methods.Rd man/miloR-package.Rd man/plotDAbeeswarm.Rd man/plotNhoodExpressionDA.Rd man/plotNhoodGraph.Rd man/plotNhoodGraphDA.Rd man/plotNhoodMA.Rd man/plotNhoodSizeHist.Rd man/sim_discrete.Rd man/sim_trajectory.Rd man/testDiffExp.Rd man/testNhoods.Rd
milo_schematic.png
tests/testthat.R tests/testthat/test_annotateNhoods.R tests/testthat/test_buildFromAdjacency.R tests/testthat/test_buildGraph.R tests/testthat/test_buildNhoodGraph.R tests/testthat/test_calcNhoodDistance.R tests/testthat/test_calcNhoodExpression.R tests/testthat/test_classes.R tests/testthat/test_countCells.R tests/testthat/test_findNhoodGroupMarkers.R tests/testthat/test_findNhoodMarkers.R tests/testthat/test_graphSpatialFDR.R tests/testthat/test_groupNhoodMarkers.R tests/testthat/test_makeNhoods.R tests/testthat/test_plotNhoods.R tests/testthat/test_testDiffExp.R tests/testthat/test_testNhoods.R
vignettes/.gitignore
vignettes/milo_contrasts.Rmd vignettes/milo_demo.Rmd vignettes/milo_gastrulation.Rmd
MikeDMorgan/miloR documentation built on Aug. 7, 2022, 8:21 a.m.