plotNhoodGraph | R Documentation |
Visualize graph of neighbourhoods
plotNhoodGraph( x, layout = "UMAP", colour_by = NA, subset.nhoods = NULL, size_range = c(0.5, 3), node_stroke = 0.3, ... )
x |
A |
layout |
this can be (a) a character indicating the name of the |
colour_by |
this can be a data.frame of milo results or a character corresponding to a column in colData |
subset.nhoods |
A logical, integer or character vector indicating a subset of nhoods to show in plot (default: NULL, no subsetting) |
size_range |
a numeric vector indicating the range of node sizes to use for plotting (to avoid overplotting in the graph) |
node_stroke |
a numeric indicating the desired thickness of the border around each node |
... |
arguments to pass to |
a ggplot-class
object
Emma Dann
NULL
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