plotNhoodGraphDA: Plot Milo results on graph of neighbourhood

View source: R/plotNhoods.R

plotNhoodGraphDAR Documentation

Plot Milo results on graph of neighbourhood

Description

Visualize log-FC estimated with differential nhood abundance testing on embedding of original single-cell dataset.

Usage

plotNhoodGraphDA(x, milo_res, alpha = 0.05, res_column = "logFC", ...)

Arguments

x

A Milo object

milo_res

a data.frame of milo results

alpha

significance level for Spatial FDR (default: 0.05)

res_column

which column of milo_res object to use for color (default: logFC)

...

arguments to pass to plotNhoodGraph

Value

a ggplot object

Author(s)

Emma Dann

Examples

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MikeDMorgan/miloR documentation built on Oct. 19, 2024, 8:39 p.m.