PhenoGraphVarRes: PhenoGraph Clustering with Various Resolution

In NCBI-Hackathons/robustSingleCell: Robust Subpopulation dEcision Trees

Description

Run RPhenograph with different resolution and save the membership as a data frame with column names as the k parameter.

Usage

PhenoGraphVarRes(data, K)

Arguments

data	A input data matrix for Rphenograph.
K	A numeric vector of resolutions.

Value

A list containing a data matrix of membership at each K and a

A list containing a data matrix of membership at each K and a vector of clustering modularity

Examples

iris_unique = unique(iris) # Remove duplicates
data = as.matrix(iris_unique[,1:4])
K = seq(10, 50, length.out=5)
res = PhenoGraphVarRes(data, K=K)
res

NCBI-Hackathons/robustSingleCell documentation built on May 9, 2019, 3:27 a.m.