Description Usage Arguments Value Author(s)
Preprocess 10X dataset
1 2 3 4 | preprocess_data(path, min.cells = 3, min.genes = 200,
nGene_thresh = NULL, percent_mito_thresh = 0.98,
mito_thresh = NULL, x.low.cutoff = 0.1, x.high.cutoff = 8,
y.cutoff = 1, regress = F)
|
path |
The path to the dataset |
min.cells |
The minimum number of cells for each gene |
min.genes |
The minimum number of genes for each cell |
nGene_thresh |
The quantile threshold for multilplets based on nGene |
percent_mito_thresh |
The quantile threshold for multilplets based on mitochondrial gene expression percentage |
A Seurat object with data normalized, scaled and PCA performed
Meng Wang
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