DE_level_k: sensitive DE at level k of the hierarchy
In NCBI-Hackathons/robustSingleCell: Robust Subpopulation dEcision Trees
Description
Usage
Arguments
Value
Description
sensitive DE at level k of the hierarchy
Usage
1
DE_level_k(cluster_name, expression, q_thresh, FC_thresh)
Arguments
cluster_name
the name of the clusters that each cell belongs to
expression
m by n expression matrix for $m$ genes and $n$ cells
q_thresh
q value threshold for DE analysis
FC_thresh
fold change threshold for DE analysis
Value
differentially expressed genes for each cluster
NCBI-Hackathons/robustSingleCell documentation built on May 9, 2019, 3:27 a.m.
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Description Usage Arguments Value
Description
sensitive DE at level k of the hierarchy
Usage
1 | DE_level_k(cluster_name, expression, q_thresh, FC_thresh)
|
Arguments
cluster_name |
the name of the clusters that each cell belongs to |
expression |
m by n expression matrix for $m$ genes and $n$ cells |
q_thresh |
q value threshold for DE analysis |
FC_thresh |
fold change threshold for DE analysis |
Value
differentially expressed genes for each cluster
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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