SimpleDE: Differential expression that iteratively compares one cluster...
In NCBI-Hackathons/robustSingleCell: Robust Subpopulation dEcision Trees
Description
Usage
Arguments
Value
Description
Differential expression that iteratively compares one cluster against all the others
Usage
1
SimpleDE(bottom_id, normalized, q_thresh = 0.1, FC_thresh = 1.2)
Arguments
bottom_id
the cluster id of each cell
normalized
the normalized expression matrix with column ordered as the bottom_id
q_thresh
q value threshold for DE analysis
FC_thresh
fold change threshold for DE analysis
Value
the list of genes that are overexpressed for each cluster against all others
NCBI-Hackathons/robustSingleCell documentation built on May 9, 2019, 3:27 a.m.
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Description Usage Arguments Value
Description
Differential expression that iteratively compares one cluster against all the others
Usage
1 | SimpleDE(bottom_id, normalized, q_thresh = 0.1, FC_thresh = 1.2)
|
Arguments
bottom_id |
the cluster id of each cell |
normalized |
the normalized expression matrix with column ordered as the bottom_id |
q_thresh |
q value threshold for DE analysis |
FC_thresh |
fold change threshold for DE analysis |
Value
the list of genes that are overexpressed for each cluster against all others
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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