sens_DE: sensitive DE at all levels of the hierarchy

Description Usage Arguments Value

Description

sensitive DE at all levels of the hierarchy

Usage

1
sens_DE(expression.all, cell_ancestor_matrix, q_thresh, FC_thresh)

Arguments

expression.all

the $m$ genes by $n$ cells expression matrix

cell_ancestor_matrix

hierarchy of the cells

q_thresh

q value threshold for DE analysis

FC_thresh

fold change threshold for DE analysis

Value

differentially expressed genes for each node in the hierarchy


NCBI-Hackathons/robustSingleCell documentation built on May 9, 2019, 3:27 a.m.