Description Usage Arguments Value
sensitive DE at all levels of the hierarchy
1 | sens_DE(expression.all, cell_ancestor_matrix, q_thresh, FC_thresh)
|
expression.all |
the $m$ genes by $n$ cells expression matrix |
cell_ancestor_matrix |
hierarchy of the cells |
q_thresh |
q value threshold for DE analysis |
FC_thresh |
fold change threshold for DE analysis |
differentially expressed genes for each node in the hierarchy
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