get_HVG: Get highly variable genes

In NCBI-Hackathons/robustSingleCell: Robust Subpopulation dEcision Trees

Description

Get highly variable genes

Usage

get_HVG(filtered.normalized, dir_path, min.mean, min.frac.cells,
  min.dispersion.scaled, remove_RP = TRUE)

Arguments

filtered.normalized	Filtered and normalized data matrix
dir_path	Path to the directory where the figure is output
min.mean	The minimum mean for filtering criterion
min.frac.cells	The fraction of cells that are not zero for genes
min.dispersion.scaled	The minimum scaled dispersion for the genes

Value

The names of the genes that are defined as highly variable based on the criterion

NCBI-Hackathons/robustSingleCell documentation built on May 9, 2019, 3:27 a.m.