checkQCFlags-NanoStringGeoMxSet-method: checkQCFlags

In Nanostring-Biostats/GeomxTools: NanoString GeoMx Tools

checkQCFlags

Description

checkQCFlags

Usage

## S4 method for signature 'NanoStringGeoMxSet'
checkQCFlags(object, removeLowLocalOutliers = FALSE, ...)

Arguments

object	name of the NanoStringGeoMxSet object to check the QC Flags
removeLowLocalOutliers	logical, if TRUE it sets outlier counts to zero, default is FALSE,
...	optional arguments

Value

NanoStringGeoMxSet

Examples

datadir <- system.file("extdata", "DSP_NGS_Example_Data",
  package = "GeomxTools"
)
demoData <- readRDS(file.path(datadir, "/demoData.rds"))
QCobject <- checkQCFlags(demoData)

Nanostring-Biostats/GeomxTools documentation built on Dec. 17, 2024, 11:50 a.m.