View source: R/NanoStringGeoMxSet-autoplot.R
plotConcordance | R Documentation |
Upper panels are the concordance plot. Lower panels are the standard deviation of the log2-ratios between the targets
plotConcordance(targetList, object, plotFactor)
targetList |
names of targets to plot concordance, normally IgGs. |
object |
name of the object class to subset
|
plotFactor |
segment factor to color the plot by |
proteinData <- readRDS(file= system.file("extdata","DSP_Proteogenomics_Example_Data",
"proteinData.rds", package = "GeomxTools"))
igg.names <- iggNames(proteinData)
protSegTypeFig <- plotConcordance(targetList = igg.names, object = proteinData,
plotFactor = "Segment_Type")
protSegTypeFig
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