checkQCFlags: Check QC Flags in the GeoMxSet and removes the probe or...

In Nanostring-Biostats/GeomxTools: NanoString GeoMx Tools

Check QC Flags in the GeoMxSet and removes the probe or sample from the object

Description

Check QC Flags in the GeoMxSet and removes the probe or sample from the object

Usage

checkQCFlags(object, ...)

Arguments

object	name of the NanoStringGeoMxSet object to check the QC Flags
...	for other arguments

Value

a NanoStringGeoMxSet object probes and samples failing QC removed

Examples

datadir <- system.file("extdata", "DSP_NGS_Example_Data",
  package = "GeomxTools"
)
demoData <- readRDS(file.path(datadir, "/demoData.rds"))
QCobject <- checkQCFlags(demoData)

Nanostring-Biostats/GeomxTools documentation built on Dec. 17, 2024, 11:50 a.m.