setQCFlags-NanoStringGeoMxSet-method: Add QC flags to feature and protocol data simultaneously

In Nanostring-Biostats/GeomxTools: NanoString GeoMx Tools

Add QC flags to feature and protocol data simultaneously

Description

Add QC flags to feature and protocol data simultaneously

Usage

## S4 method for signature 'NanoStringGeoMxSet'
setQCFlags(object, qcCutoffs = DEFAULTS, ...)

Arguments

object	name of the object class to perform QC on NanoStringGeoMxSet, use the NanoStringGeoMxSet class
qcCutoffs	list of cutoffs and thresholds to use for QC
...	optional parameters to pass

Value

the object that QC was performed on

Examples

datadir <- system.file("extdata", "DSP_NGS_Example_Data",
                       package="GeomxTools")
demoData <- readRDS(file.path(datadir, "/demoData.rds"))
setQCFlags(demoData[,1:10])

Nanostring-Biostats/GeomxTools documentation built on Sept. 24, 2024, 4:51 p.m.