readPKCFile: Read PKC File

In Nanostring-Biostats/GeomxTools: NanoString GeoMx Tools

Read PKC File

Description

Read a NanoString Probe Kit Configuration (PKC) file.

Usage

readPKCFile(file, default_pkc_vers=NULL)

Arguments

file	A character string containing the path to the PKC file.
default_pkc_vers	Optional list of pkc file names to use as default if more than one pkc version of each module is provided.

Value

An instance of the DataFrame class containing columns:

"RTS_ID"	unique probe ID
"TargetName"	target or gene name
"Module"	PKC name
"Negative"	negative probe
...	additional columns

Author(s)

Zhi Yang & Nicole Ortogero

See Also

readNanoStringGeoMxSet

Examples

datadir <- system.file("extdata", "DSP_NGS_Example_Data",
                       package="GeomxTools")
pkc <- unzip(zipfile = file.path(datadir,  "/pkcs.zip"))
PKCData <- readPKCFile(pkc)

Nanostring-Biostats/GeomxTools documentation built on April 14, 2024, 1:25 a.m.