readPKCFile: Read PKC File
In Nanostring-Biostats/GeomxTools: NanoString GeoMx Tools

readPKCFile

R Documentation

Read PKC File

Description

Read a NanoString Probe Kit Configuration (PKC) file.

Usage

readPKCFile(file, default_pkc_vers=NULL)

Arguments

`file`	A character string containing the path to the PKC file.
`default_pkc_vers`	Optional list of pkc file names to use as default if more than one pkc version of each module is provided.

Value

An instance of the DataFrame class containing columns:

`"RTS_ID"`	unique probe ID
`"TargetName"`	target or gene name
`"Module"`	PKC name
`"Negative"`	negative probe
`...`	additional columns

Author(s)

Zhi Yang & Nicole Ortogero

Examples

datadir <- system.file("extdata", "DSP_NGS_Example_Data",
                       package="GeomxTools")
pkc <- unzip(zipfile = file.path(datadir,  "/pkcs.zip"))
PKCData <- readPKCFile(pkc)

Nanostring-Biostats/GeomxTools documentation built on Sept. 24, 2024, 4:51 p.m.