shiftCountsOne: Add one to all counts in an expression matrix
In Nanostring-Biostats/GeomxTools: NanoString GeoMx Tools

shiftCountsOne

R Documentation

Add one to all counts in an expression matrix

Description

Add one to all counts in an expression matrix

Usage

shiftCountsOne(object, elt = "exprs", useDALogic = FALSE)

Arguments

`object`	name of the NanoStringGeoMxSet object
`elt`	expression matrix element in `assayDataElement` to shift all counts by
`useDALogic`	boolean to use the same logic in DA (impute 0s to 1s) or set to FALSE to shift all counts by 1

Value

object of NanoStringGeoMxSet class

Examples

datadir <- system.file("extdata", "DSP_NGS_Example_Data",
                       package="GeomxTools")
demoData <- readRDS(file.path(datadir, "/demoData.rds"))
shiftCountsOne(demoData)

Nanostring-Biostats/GeomxTools documentation built on Dec. 17, 2024, 11:50 a.m.