qcProteinSignal: Generate Protein QC signal boxplot figure

In Nanostring-Biostats/GeomxTools: NanoString GeoMx Tools

Generate Protein QC signal boxplot figure

Description

For use with protein data ONLY.

Usage

qcProteinSignal(object, neg.names = NULL)

Arguments

object	name of the object class to subset NanoStringGeoMxSet, use the NanoStringGeoMxSet class
neg.names	names of IgGs, if NULL IgGs will be detected automatically

Value

figure function

Examples

proteinData <- readRDS(file= system.file("extdata","DSP_Proteogenomics_Example_Data", 
"proteinData.rds", package = "GeomxTools"))

igg.names <- iggNames(proteinData)

qcFig <- qcProteinSignal(object = proteinData, neg.names = igg.names)

qcFig()

Nanostring-Biostats/GeomxTools documentation built on April 14, 2024, 1:25 a.m.