createCoordFile: Create coordinate file for entire scan
In Nanostring-Biostats/SpatialOmicsOverlay: Spatial Overlay for Omic Data from Nanostring GeoMx Data
View source: R/coordinateGeneration.R
createCoordFile R Documentation
Create coordinate file for entire scan
Description
Create coordinate file for entire scan
Usage
createCoordFile(overlay, outline = TRUE)
Arguments
overlay
SpatialOverlay object
outline
returned coordinates only contain boundaries,
will not work for segmented ROIs
Value
df of coordinates for every AOI in the scan
Examples
muBrain <- readRDS(unzip(system.file("extdata", "muBrainSubset_SpatialOverlay.zip",
package = "SpatialOmicsOverlay")))
muBrain <- createCoordFile(muBrain, outline = FALSE)
head(coords(muBrain))
Nanostring-Biostats/SpatialOmicsOverlay documentation built on April 20, 2024, 5:36 a.m.
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View source: R/coordinateGeneration.R
| createCoordFile | R Documentation |
Create coordinate file for entire scan
Description
Create coordinate file for entire scan
Usage
createCoordFile(overlay, outline = TRUE)
Arguments
overlay |
SpatialOverlay object |
outline |
returned coordinates only contain boundaries, will not work for segmented ROIs |
Value
df of coordinates for every AOI in the scan
Examples
muBrain <- readRDS(unzip(system.file("extdata", "muBrainSubset_SpatialOverlay.zip",
package = "SpatialOmicsOverlay")))
muBrain <- createCoordFile(muBrain, outline = FALSE)
head(coords(muBrain))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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