moveCoords: Move coordinates if they don't match image

In Nanostring-Biostats/SpatialOmicsOverlay: Spatial Overlay for Omic Data from Nanostring GeoMx Data

Move coordinates if they don't match image

Description

If generated coordinates do not match the image use this function to move coordinates. Coordinates are only changed 1 pixel at a time.

Usage

moveCoords(overlay, direction = "right")

Arguments

overlay	SpatialOverlay object
direction	which direction should coordinates move: left, right, up, down

Value

SpatialOverlay object

Examples

muBrain <- readRDS(unzip(system.file("extdata", "muBrainSubset_SpatialOverlay.zip", 
                                    package = "SpatialOmicsOverlay")))
head(coords(muBrain), 3)
head(coords(moveCoords(muBrain, direction = "up")), 3)                                    

Nanostring-Biostats/SpatialOmicsOverlay documentation built on Dec. 18, 2024, 9:26 a.m.