annotMatching: Match ROIs in annotation file to xml
In Nanostring-Biostats/SpatialOmicsOverlay: Spatial Overlay for Omic Data from Nanostring GeoMx Data
annotMatching R Documentation
Match ROIs in annotation file to xml
Description
Match ROIs in annotation file to xml
Usage
annotMatching(annots, ROInum, maskNum, maskText, segCol = NULL)
Arguments
annots
df of annotations
ROInum
ROI number from xml file
maskNum
number of masks for ROI, used for AOI matching in software
<= v2.4
maskText
segment name, used for AOI matching in software v2.4+
segCol
column containing segment name, if NULL function will determine automatically
Value
df with ROI unique identifiers
Nanostring-Biostats/SpatialOmicsOverlay documentation built on April 20, 2024, 5:36 a.m.
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| annotMatching | R Documentation |
Match ROIs in annotation file to xml
Description
Match ROIs in annotation file to xml
Usage
annotMatching(annots, ROInum, maskNum, maskText, segCol = NULL)
Arguments
annots |
df of annotations |
ROInum |
ROI number from xml file |
maskNum |
number of masks for ROI, used for AOI matching in software <= v2.4 |
maskText |
segment name, used for AOI matching in software v2.4+ |
segCol |
column containing segment name, if NULL function will determine automatically |
Value
df with ROI unique identifiers
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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