parseScanMetadata: Parse the xml file for the scan metadata of GeoMx images

View source: R/xmlParsing.R

parseScanMetadataR Documentation

Parse the xml file for the scan metadata of GeoMx images

Description

Parse the xml file for the scan metadata of GeoMx images

Usage

parseScanMetadata(omexml)

Arguments

omexml

xml file from OME-TIFF, can provide path to OME-TIFF and xml will automatically be extracted

Value

metadata for entire scan

Examples


image <- downloadMouseBrainImage()

xml <- xmlExtraction(ometiff = image)

scan_metadata <- parseScanMetadata(omexml = xml)


Nanostring-Biostats/SpatialOmicsOverlay documentation built on Feb. 5, 2024, 9:04 a.m.