parseScanMetadata: Parse the xml file for the scan metadata of GeoMx images
In Nanostring-Biostats/SpatialOmicsOverlay: Spatial Overlay for Omic Data from Nanostring GeoMx Data
parseScanMetadata R Documentation
Parse the xml file for the scan metadata of GeoMx images
Description
Parse the xml file for the scan metadata of GeoMx images
Usage
parseScanMetadata(omexml)
Arguments
omexml
xml file from OME-TIFF, can provide path to OME-TIFF and
xml will automatically be extracted
Value
metadata for entire scan
Examples
image <- downloadMouseBrainImage()
xml <- xmlExtraction(ometiff = image)
scan_metadata <- parseScanMetadata(omexml = xml)
Nanostring-Biostats/SpatialOmicsOverlay documentation built on April 20, 2024, 5:36 a.m.
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| parseScanMetadata | R Documentation |
Parse the xml file for the scan metadata of GeoMx images
Description
Parse the xml file for the scan metadata of GeoMx images
Usage
parseScanMetadata(omexml)
Arguments
omexml |
xml file from OME-TIFF, can provide path to OME-TIFF and xml will automatically be extracted |
Value
metadata for entire scan
Examples
image <- downloadMouseBrainImage()
xml <- xmlExtraction(ometiff = image)
scan_metadata <- parseScanMetadata(omexml = xml)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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