removeSample: Remove sample(s) from SpatialOverlay

In Nanostring-Biostats/SpatialOmicsOverlay: Spatial Overlay for Omic Data from Nanostring GeoMx Data

Remove sample(s) from SpatialOverlay

Description

Remove sample(s) from SpatialOverlay

Usage

removeSample(overlay, remove)

Arguments

overlay	SpatialOverlay object
remove	sampNames of overlay to remove

Value

SpatialOverlay object without samples in remove

Examples

muBrain <- readRDS(unzip(system.file("extdata", "muBrainSubset_SpatialOverlay.zip", 
                                    package = "SpatialOmicsOverlay")))

muBrainLW <- system.file("extdata", "muBrain_LabWorksheet.txt", 
                         package = "SpatialOmicsOverlay")

muBrainLW <- readLabWorksheet(muBrainLW, slideName = "D5761 (3)")

samps <- muBrainLW$Sample_ID[muBrainLW$segment != "Full ROI"]

muBrainSub <- removeSample(overlay = muBrain, remove = samps)

muBrain
muBrainSub

Nanostring-Biostats/SpatialOmicsOverlay documentation built on Dec. 18, 2024, 9:26 a.m.