rna.impute: Impute missing values in a SummarizedExperiment object

In NicWir/VisomX: User-Friendly and Comprehensive Analysis and Visualization of Omics Data

Impute missing values in a SummarizedExperiment object

Description

This function imputes missing values in a SummarizedExperiment object, using the specified imputation method.

Usage

rna.impute(
  se,
  fun = c("zero", "bpca", "knn", "QRILC", "MLE", "MinDet", "MinProb", "man", "min",
    "zero", "mixed", "nbavg", "SampMin"),
  ...
)

Arguments

se	A SummarizedExperiment object.
fun	A character vector specifying the imputation method. Options include "zero", "bpca", "knn", "QRILC", "MLE", "MinDet", "MinProb", "man", "min", "zero", "mixed", "nbavg", and "SampMin".
...	Additional arguments passed to the imputation method.

Details

"SampMin" replaces missing values with the minimum value found in each sample. For information about the remaining imputation methods, see help("imputeMethods", "MsCoreUtils")

Value

A SummarizedExperiment object with missing values imputed.

NicWir/VisomX documentation built on Dec. 8, 2024, 1:27 a.m.