Man pages for OJWatson/sims4
Epidemic generational simualator
| BEAST_R0_Network_Pull_Tracer | BEAST_R0_Network_Pull_Tracer |
| BEAST_R0_Network_Tracer_Addon | Tracer Addon Function Specific for the BEAST R0 Checks |
| Broken_Generation_Sim | Fixed Offspring and Generation Time epidemic genetic... |
| Case_To_Phylo | Create phylo class tree object |
| Check_Sim | Generation epidemic genetic simulator |
| Generation_Sim | Generation epidemic genetic simulator |
| HKY85 | HKY85 Substiution Model |
| JC69 | JC69 Substiution Model |
| K80 | K80 Substiution Model |
| List_To_Xml | List to XML |
| Network_Pull_Tracer | Network_Pull_Tracer |
| Network_Tracer_Addon | Network Tracer Addon Function |
| Nex_2_BEASTxml | Take nex and turn into BEAST 2.3 xml file |
| Old_Tracer_Accumulation | Old Tracer Accumlation Function |
| Optimised_Tip_Samples | Sampling Optimisation Sample Creation |
| R0_Broken_Generation_Sim | Fixed Offspring, variable generation time epidemic genetic... |
| R0_Broken_Time_Sim | R0 Broken Time explicit simulator |
| Seqgen_Validation | seqgen validation of sims4 sequence evolution |
| Spatial_Generation_Sim | Spatial Generation epidemic genetic simulator |
| Spatial_Tip_Samples | Spatial Tip Sampling Procedure |
| Tg_Broken_Generation_Sim | Variable Offspring, fixed generation time epidemic genetic... |
| Three_Tracer_Plot_Median | 4x3 Tracer import median plot |
| Time_Sim | Time explicit simulator |
| Tip_Samples | Tip Sampling Procedure |
| Tracer_Accumulation | Tracer Accumlation Function |
| Tracer_Addon | Tracer Addon Function |
| Tracer_Import | Tracer Import and Ammendment |
| Tracer_Plot_Mean | 2x2 Tracer import mean plot |
| Tracer_Plot_Median | 2x2 Tracer import plot median |
