HKY85: HKY85 Substiution Model
In OJWatson/sims4: Epidemic generational simualator
Description
Usage
Arguments
Value
Description
This function creates the rate matrix of the HKY85 model before calculating the
related transition matrix, P, using the mutation (mu), branch length/time (t) and transition
transversion ratio (kappah)
Usage
1
Arguments
mu
- Mutation rate
t
- Branch length, i.e. specific generation time
kappa
- ransition/transversion rate ratio
pi
- Base Frequencies
Value
This function returns a dgeMatrix containing the transition matrix P
OJWatson/sims4 documentation built on May 7, 2019, 8:33 p.m.
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Description Usage Arguments Value
Description
This function creates the rate matrix of the HKY85 model before calculating the related transition matrix, P, using the mutation (mu), branch length/time (t) and transition transversion ratio (kappah)
Usage
1 |
Arguments
mu |
- Mutation rate |
t |
- Branch length, i.e. specific generation time |
kappa |
- ransition/transversion rate ratio |
pi |
- Base Frequencies |
Value
This function returns a dgeMatrix containing the transition matrix P
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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