Description Usage Arguments Value
Summary Statistics are clock rate, growthRate, ePop and TMRCA.
1 2 3 4 5 6 | Network_Pull_Tracer(reps = 1, dirs = seq(from = 1, to = 19.5, by = 0.5),
vars = 5, var.R0 = TRUE, N.v = c(rep(10000, length(dirs))),
mu.v = c(rep(1e-04, length(dirs))), Tg.v = c(rep(50, length(dirs))),
R0.v = c(rep(2.4, length(dirs))),
network.root.dir = "LSD4\\mu_1e-04_R0_2.4_Tg_50\\",
local.root.dir = "LSD4/mu_1e-04_R0_2.4_Tg_50/")
|
reps |
replicates total. Default = 10 |
dirs |
number of subdirectories to be scanned |
vars |
variables total. Default = 5 |
var.R0 |
boolean for whether Generation_Sim or Broken was used in data creation. Default=TRUE |
N.v |
column vector of N. Default: N.v=c(rep(10000,reps)), |
mu.v |
column vector of mutation rates in directory. Default: mu.v=c(1e-04, rep(0.001,3), rep(1e-04,3), rep(1e-05,3)), |
Tg.v |
column vector of generation times in directory. Default: Tg.v=c(1,rep(3,9)), |
R0.v |
column vector of R0 in directory. Default: R0.v=c(2,rep(c(2,5,20),3)), |
root.dir |
- root directory, omitting a final / |
Returns a data frame of collated statstics
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