BEAST_R0_Network_Pull_Tracer: BEAST_R0_Network_Pull_Tracer

In OJWatson/sims4: Epidemic generational simualator

Description

Summary Statistics are clock rate, growthRate, ePop and TMRCA.

Usage

BEAST_R0_Network_Pull_Tracer(reps = 10, dirs = 10, vars = 5,
  var.R0 = TRUE, N.v = c(rep(10000, length(dirs))), mu.v = c(rep(1e-04,
  length(dirs))), Tg.v = c(rep(50, length(dirs))), R0.v = c(rep(2,
  length(dirs))),
  network.root.dir = "VarianceCheck\\mu_1e-04_R0_2_Tg_50\\NoVariance\\",
  local.root.dir = "VarianceCheck/mu_1e-04_R0_2_Tg_50/NoVariance/")

Arguments

reps	replicates total. Default = 10
dirs	number of subdirectories to be scanned
vars	variables total. Default = 5
var.R0	boolean for whether Generation_Sim or Broken was used in data creation. Default=TRUE
N.v	column vector of N. Default: N.v=c(rep(10000,reps)),
mu.v	column vector of mutation rates in directory. Default: mu.v=c(1e-04, rep(0.001,3), rep(1e-04,3), rep(1e-05,3)),
Tg.v	column vector of generation times in directory. Default: Tg.v=c(1,rep(3,9)),
R0.v	column vector of R0 in directory. Default: R0.v=c(2,rep(c(2,5,20),3)),
root.dir	- root directory, omitting a final /

Value

Returns a data frame of collated statstics

OJWatson/sims4 documentation built on May 7, 2019, 8:33 p.m.