Description Usage Arguments Details Value
This function links with Tracer_Accumulation by creating the summary.txt file needed, by loading the log files as needed and first writing it
1 2 | BEAST_R0_Network_Tracer_Addon(cmd = paste("\"C:\\Users\\Oliver\\Google Drive\\Academic Work\\Imperial\\O15-12\\BEAST\\BEAST v1.8.2\\bin\\loganalyser.cmd\""),
file.dir, nex.dir, reps, replicate.name = "replicate")
|
cmd |
shellscript path name for loganalyser.cmd. Tracer Addon uses the internal function shell(), so path must be written accordingly |
file.dir |
directory where the sumamry.txt file will be written to |
reps |
number of reps within the log.dir |
log.dir |
directory from which the log files are to be read from |
Summary Statistics are clock rate, growthRate, ePop and TMRCA.
writes summary.txt file
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