Description Usage Arguments Value
This function creates the rate matrix of the K80 model before calculating the related transition matrix, P, using the mutation (mu), branch length/time (t) and transition transversion ratio (kappah)
1 |
mu |
- Mutation rate |
t |
- Branch length, i.e. specific generation time |
kappa |
- ransition/transversion rate ratio |
pi |
- Base Frequencies |
This function returns a dgeMatrix
containing the transition matrix P
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