Files in OJWatson/sims4
Epidemic generational simualator
.Rbuildignore
.gitignore
DESCRIPTION
Data/Figure2.svg
Data/HA.fasta
Data/Tables2&3.svg
Data/appendix1.svg
Data/appendix2.svg
Data/figure1.svg
Data/figure3.svg
Data/figure4.svg
Data/figure5.svg
Data/figure6.svg
Data/figure7&8.svg
Data/figure9&10.svg
Data/poster.svg
Data/poster1&2.svg
Data/poster3&4.svg
Data/poster3.svg
Data/root.RData
Data/spatial.xml
Data/test.xml
Data/testrelaxed.xml
Final.Data.RData
LICENSE
NAMESPACE
R/.gitignore
R/HKY85.R
R/JC69.R
R/K80.R
R/beast-R0-catch.R
R/beast-R0-check.R
R/beast-R0-full.R
R/beast-R0-network-tracer-accumlation.R
R/beast-lsd-bootstrap.R
R/list-to-xml.R
R/lsd-beast-plot.R
R/lsd-bootstrap-solo.R
R/lsd-bootstrap.R
R/lsd-data-frame.R
R/lsd-data-pull.R
R/lsd-redo.R
R/network-tracer-accumlation.R
R/nex-to-beast-xml.R
R/optimised-sampling.R
R/phylo-build.R
R/probability-sim.R
R/spatial-generation-sim.R
R/spatial-sample-build.R
R/time-sim.R
R/tracer-accumlation.R
R/tracer-addon.R
README.md
Scripts/.gitignore
Scripts/Correct Write Up Data Script.R
Scripts/matel-tests.R
Scripts/tempsignalfunctions.R
dhs.mung_tutorial.html
man/BEAST_R0_Network_Pull_Tracer.Rd
man/BEAST_R0_Network_Tracer_Addon.Rd
man/Broken_Generation_Sim.Rd
man/Case_To_Phylo.Rd
man/Check_Sim.Rd
man/Generation_Sim.Rd
man/HKY85.Rd
man/JC69.Rd
man/K80.Rd
man/List_To_Xml.Rd
man/Network_Pull_Tracer.Rd
man/Network_Tracer_Addon.Rd
man/Nex_2_BEASTxml.Rd
man/Old_Tracer_Accumulation.Rd
man/Optimised_Tip_Samples.Rd
man/R0_Broken_Generation_Sim.Rd
man/R0_Broken_Time_Sim.Rd
man/Seqgen_Validation.Rd
man/Spatial_Generation_Sim.Rd
man/Spatial_Tip_Samples.Rd
man/Tg_Broken_Generation_Sim.Rd
man/Three_Tracer_Plot_Median.Rd
man/Time_Sim.Rd
man/Tip_Samples.Rd
man/Tracer_Accumulation.Rd
man/Tracer_Addon.Rd
man/Tracer_Import.Rd
man/Tracer_Plot_Mean.Rd
man/Tracer_Plot_Median.Rd
sims4.Rproj
