Files in PLN-team/PLNmodels

Poisson Lognormal Models

NEWS.md R/PLN.R R/PLNLDA.R R/PLNLDAfit-S3methods.R R/PLNLDAfit-class.R R/PLNPCA.R R/PLNPCAfamily-S3methods.R R/PLNPCAfamily-class.R R/PLNPCAfit-S3methods.R R/PLNPCAfit-class.R R/PLNfamily-S3methods.R R/PLNfamily-class.R R/PLNfit-S3methods.R R/PLNfit-class.R R/PLNmixture.R R/PLNmixturefamily-S3methods.R R/PLNmixturefamily-class.R R/PLNmixturefit-S3methods.R R/PLNmixturefit-class.R R/PLNmodels-package.R R/PLNnetwork.R R/PLNnetworkfamily-S3methods.R R/PLNnetworkfamily-class.R R/PLNnetworkfit-S3methods.R R/PLNnetworkfit-class.R R/RcppExports.R R/ZIPLN.R R/ZIPLNfit-S3methods.R R/ZIPLNfit-class.R R/ZIPLNnetwork.R R/barents.R R/import_utils.R R/mollusk.R R/oaks.R R/plot_utils.R R/scRNA.R R/trichoptera.R R/utils-pipe.R R/utils-zipln.R R/utils.R R/zzz.R README.Rmd README.md cran-comments.md data-raw/oaks.R data-raw/scRNA.R inst/case_studies/metaweb.R inst/case_studies/mixture_iris.R inst/case_studies/mollusk.R inst/case_studies/oaks_tree.R inst/case_studies/oaks_widgets.Rmd inst/case_studies/scRNA.R inst/check/inconsistency_VEM.R inst/check/jackknife_variance.R inst/check/mwe_vestep_pln.R inst/check/objective_zipln.R inst/check/variance_estimates.R inst/missing_data/call_optim_PCA.R inst/simus_PLNnetwork/assesNetworkInference.R inst/simus_PLNnetwork/func_data_generation.R inst/simus_PLNnetwork/func_networks.R inst/simus_PLNnetwork/func_utils.R inst/simus_PLNnetwork/kendall_tau_network.R inst/simus_ZIPLN/essai_ZIPLN.R inst/sticker/create_sticker.R inst/torch_for_r/torch_PLN.R inst/torch_for_r/torchpca.R man/Networkfamily.Rd man/PLN.Rd man/PLNLDA.Rd man/PLNLDA_param.Rd man/PLNLDAfit.Rd man/PLNLDAfit_diagonal.Rd man/PLNPCA.Rd man/PLNPCA_param.Rd man/PLNPCAfamily.Rd man/PLNPCAfit.Rd man/PLN_param.Rd man/PLNfamily.Rd man/PLNfit.Rd man/PLNfit_diagonal.Rd man/PLNfit_fixedcov.Rd man/PLNfit_spherical.Rd man/PLNmixture.Rd man/PLNmixture_param.Rd man/PLNmixturefamily.Rd man/PLNmixturefit.Rd man/PLNmodels-package.Rd man/PLNnetwork.Rd man/PLNnetwork_param.Rd man/PLNnetworkfamily.Rd man/PLNnetworkfit.Rd man/ZIPLN.Rd man/ZIPLN_param.Rd man/ZIPLNfit.Rd man/ZIPLNfit_diagonal.Rd man/ZIPLNfit_fixed.Rd man/ZIPLNfit_sparse.Rd man/ZIPLNfit_spherical.Rd man/ZIPLNnetwork.Rd man/ZIPLNnetwork_param.Rd man/ZIPLNnetworkfamily.Rd man/barents.Rd man/coef.PLNLDAfit.Rd man/coef.PLNfit.Rd man/coef.PLNmixturefit.Rd man/coef.ZIPLNfit.Rd man/coefficient_path.Rd man/compute_PLN_starting_point.Rd man/compute_offset.Rd man/extract_probs.Rd man/fitted.PLNfit.Rd man/fitted.PLNmixturefit.Rd man/fitted.ZIPLNfit.Rd man/getBestModel.Rd man/getModel.Rd man/mollusk.Rd man/oaks.Rd man/pipe.Rd man/plot.Networkfamily.Rd man/plot.PLNLDAfit.Rd man/plot.PLNPCAfamily.Rd man/plot.PLNPCAfit.Rd man/plot.PLNfamily.Rd man/plot.PLNmixturefamily.Rd man/plot.PLNmixturefit.Rd man/plot.PLNnetworkfit.Rd man/plot.ZIPLNfit_sparse.Rd man/predict.PLNLDAfit.Rd man/predict.PLNfit.Rd man/predict.PLNmixturefit.Rd man/predict.ZIPLNfit.Rd man/predict_cond.Rd man/prepare_data.Rd man/rPLN.Rd man/scRNA.Rd man/sigma.PLNfit.Rd man/sigma.PLNmixturefit.Rd man/sigma.ZIPLNfit.Rd man/stability_selection.Rd man/standard_error.Rd man/trichoptera.Rd man/vcov.PLNfit.Rd tests/testthat.R tests/testthat/test-cpp.R tests/testthat/test-import-utils.R tests/testthat/test-pln.R tests/testthat/test-plnfamily.R tests/testthat/test-plnfit.R tests/testthat/test-plnlda-fit.R tests/testthat/test-plnlda.R tests/testthat/test-plnmixture.R tests/testthat/test-plnnetworkfamily.R tests/testthat/test-plnnetworkfit.R tests/testthat/test-plnpcafamily.R tests/testthat/test-plnpcafit.R tests/testthat/test-standard-error.R tests/testthat/test-zipln.R tests/testthat/test-ziplnfit.R tests/testthat/test-ziplnnetworkfamily.R vignettes/Import_data.Rmd vignettes/PLN.Rmd vignettes/PLNLDA.Rmd vignettes/PLNPCA.Rmd vignettes/PLNmixture.Rmd vignettes/PLNnetwork.Rmd vignettes/Trichoptera.Rmd