API for PelzKo/immunedeconv2
Second generation methods for immune cell deconvolution
| Global functions | |
|---|---|
| .bisque_patched_deconvolution | Man page Source code |
| .bisque_patched_model | Man page Source code |
| .onLoad | Source code |
| RefData | Man page |
| anndata_checkload | Man page Source code |
| anndata_is_identical | Man page Source code |
| anndata_to_singlecellexperiment | Man page Source code |
| autogenes_checkload | Man page Source code |
| batch_ids_1 | Man page |
| batch_ids_2 | Man page |
| batch_ids_3 | Man page |
| bseqsc_config | Man page Source code |
| build_anndata | Man page Source code |
| build_model | Man page Source code |
| build_model_autogenes | Man page Source code |
| build_model_bayesprism | Man page Source code |
| build_model_bisque | Man page Source code |
| build_model_bseqsc | Man page Source code |
| build_model_cdseq | Man page Source code |
| build_model_cibersortx | Man page Source code |
| build_model_cpm | Man page Source code |
| build_model_dwls | Man page Source code |
| build_model_momf | Man page Source code |
| build_model_music | Man page Source code |
| build_model_scaden | Man page Source code |
| build_model_scdc | Man page Source code |
| bulk | Man page |
| calc_condition_number | Man page Source code |
| calculate_cell_embedding | Man page Source code |
| cell_type_annotations_1 | Man page |
| cell_type_annotations_2 | Man page |
| cell_type_annotations_3 | Man page |
| check_and_install | Man page Source code |
| check_container | Man page Source code |
| check_credentials | Man page Source code |
| check_data | Source code |
| convert_to_matrix | Man page Source code |
| create_container_command | Man page Source code |
| deconvolute | Man page Source code |
| deconvolute_autogenes | Man page Source code |
| deconvolute_bayesprism | Man page Source code |
| deconvolute_bisque | Man page Source code |
| deconvolute_bseqsc | Man page Source code |
| deconvolute_cdseq | Man page Source code |
| deconvolute_cibersortx | Man page Source code |
| deconvolute_cpm | Man page Source code |
| deconvolute_dwls | Man page Source code |
| deconvolute_momf | Man page Source code |
| deconvolute_music | Man page Source code |
| deconvolute_scaden | Man page Source code |
| deconvolute_scdc | Man page Source code |
| deconvolution_methods | Man page |
| deescape_special_chars | Man page Source code |
| escape_special_chars | Man page Source code |
| extract_signature_autogenes | Man page Source code |
| get_cell_fractions_options | Man page Source code |
| get_method_options | Man page Source code |
| get_signature_matrix_options | Man page Source code |
| get_single_cell_expression_set | Man page Source code |
| init_python | Man page Source code |
| install_all_python | Man page Source code |
| install_autogenes | Man page Source code |
| install_scaden | Man page Source code |
| make_barplot | Man page Source code |
| make_benchmarking_scatterplot | Man page Source code |
| matrix_to_singlecellexperiment | Man page Source code |
| normalize_deconv_results | Man page Source code |
| omnideconvstartup | Man page |
| plot_deconvolution | Man page Source code |
| python_available | Man page Source code |
| read_anndata | Man page Source code |
| required_packages | Man page |
| save_as_h5ad | Man page Source code |
| scaden_checkload | Man page Source code |
| scaden_predict | Man page Source code |
| scaden_process | Man page Source code |
| scaden_simulate | Man page Source code |
| scaden_simulate_example | Man page Source code |
| scaden_train | Man page Source code |
| sces_are_identical | Man page Source code |
| set_cibersortx_credentials | Man page Source code |
| set_python | Man page Source code |
| setup_apptainer_container | Man page Source code |
| single_cell_data_1 | Man page |
| single_cell_data_2 | Man page |
| single_cell_data_3 | Man page |
| singlecellexperiment_to_anndata | Man page Source code |
| singlecellexperiment_to_matrix | Man page Source code |
| transform_and_save_bulk | Man page Source code |
| transform_and_save_single_cell | Man page Source code |
| verbose_wrapper | Man page Source code |
| write_anndata | Man page Source code |
