Man pages for PoisonAlien/peakseason
Functions for faster ChIP/ATAC-seq analysis and visualization.
| bw_go | Perform Gene ontology |
| bw_pca | Groups samples based on signal. Useful for QC analysis |
| check_bwtools | Checks for bwtool installation binary under system path or... |
| clustered_profile_plot | Draw a profile plot |
| diffpeak | Differentail Peak Analysis |
| estimate_Pol2PI | Estimates polymerase index from Pol2 ChIP seq data. |
| extract_matrix | Extract matrix of signal values from given bigWig files... |
| extract_summary | Extract area under the curve for every peak from from given... |
| peak_size | Plots peak size distribution |
| plotgo | This function plots top ten GO process from GOSEq results |
| plot_heatmap | Draw heatmap |
| plot_profile | Draw a profile plot |
| plotSE | Draw hocky-stick plot from super enhancer results. |
| plot_summary | Groups samples based on signal. Useful for QC analysis |
| plot_tracks | Draw a track view of geiven genomic loci |
| read_coldata | Prepares meta data table from bigWig files. Output from this... |
| summarize_homer_annots | Parse peak annotations generated by homer annotatePeaks.pl |
