estimate_Pol2PI: Estimates polymerase index from Pol2 ChIP seq data.
In PoisonAlien/peakseason: Functions for faster ChIP/ATAC-seq analysis and visualization.
View source: R/estimate_Pol2PI.R
Description
Estimates polymerase index from Pol2 ChIP seq data.
Usage
1
2
estimate_Pol2PI(coldata, tx_model = NULL, tssr_up = 50,
tssr_down = 300, gb = 3000, op_dir = "./")
Arguments
coldata
coldata Coldata generated from read_coldata
tx_model
Genes in BED12 format.
tssr_up
Region upstream of TSS. Defaulr 300
gb
gene body. Region after Transcription end site. Deafult 3000.
op_dir
Directory to store results. Defult "./"
tssr_up
Region downstream of TSS. Defaulr 50
PoisonAlien/peakseason documentation built on May 14, 2019, 4:01 a.m.
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View source: R/estimate_Pol2PI.R
Description
Estimates polymerase index from Pol2 ChIP seq data.
Usage
1 2 | estimate_Pol2PI(coldata, tx_model = NULL, tssr_up = 50,
tssr_down = 300, gb = 3000, op_dir = "./")
|
Arguments
coldata |
coldata Coldata generated from |
tx_model |
Genes in BED12 format. |
tssr_up |
Region upstream of TSS. Defaulr 300 |
gb |
gene body. Region after Transcription end site. Deafult 3000. |
op_dir |
Directory to store results. Defult "./" |
tssr_up |
Region downstream of TSS. Defaulr 50 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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