clustered_profile_plot: Draw a profile plot

In PoisonAlien/peakseason: Functions for faster ChIP/ATAC-seq analysis and visualization.

Description

Draw a profile plot

Usage

clustered_profile_plot(mat_list, summarizeBy = "mean", color = NULL,
  n_rows = NULL, n_cols = NULL, sample_names = NULL,
  auto_y_axis = TRUE, ci = FALSE, line_size = 2, axis_lwd = 3,
  axis_font_size = 1, legend_font_size = 1)

Arguments

mat_list	Input matrix list generated by extract_matrix run with k
color	named vector of colors for each sample
sample_names	names for samples. Default NULL parses from bigwig files.
auto_y_axis	Default TRUE. If FALSE plots from zero to max.
ci	add SEM bars.
line_size	line width. Default 3.
axis_lwd	axis line width. Default 3.
axis_font_size	font size for axis. Default 1.
legend_font_size	cex for font size. Default 1.

Details

This function takes output from clustered extract_matrix and draws a profile plot

PoisonAlien/peakseason documentation built on May 14, 2019, 4:01 a.m.