plot_summary: Groups samples based on signal. Useful for QC analysis
In PoisonAlien/peakseason: Functions for faster ChIP/ATAC-seq analysis and visualization.
Description
Groups samples based on signal. Useful for QC analysis
Usage
1
2
plot_summary(bw_summary = NULL, log_transform = TRUE, pos_const = 1,
condition = NULL)
Arguments
bw_summary
output from extract_summary
condition
a vector of condition for each bigWig file. Samples belonging to same condition are treated as replicates. Default NULL.
fract
Fraction of data used for PCA or clustering. Default 0.25
pcs
Principal components to draw.
PoisonAlien/peakseason documentation built on May 14, 2019, 4:01 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Groups samples based on signal. Useful for QC analysis
Usage
1 2 | plot_summary(bw_summary = NULL, log_transform = TRUE, pos_const = 1,
condition = NULL)
|
Arguments
bw_summary |
output from |
condition |
a vector of condition for each bigWig file. Samples belonging to same condition are treated as replicates. Default NULL. |
fract |
Fraction of data used for PCA or clustering. Default 0.25 |
pcs |
Principal components to draw. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.