summarize_homer_annots: Parse peak annotations generated by homer annotatePeaks.pl
In PoisonAlien/peakseason: Functions for faster ChIP/ATAC-seq analysis and visualization.
Description
Usage
Arguments
Details
View source: R/summarize_homer.R
Description
Parse peak annotations generated by homer annotatePeaks.pl
Usage
1
2
summarize_homer_annots(anno, sample_names = NULL, plot = TRUE,
legend_font_size = 1, label_size = 0.8)
Arguments
anno
Raw annotations generated by annotatePeaks.pl.
plot
If TRUE generates a pie chart for peak distribution
legend_font_size
font size for legend. Default 1.
label_size
font size for labels. Default 0.8.
Details
summarizes peak annotations generated with homer annotatePeaks.pl, also a generates a pie chart of peak distributions.
PoisonAlien/peakseason documentation built on May 14, 2019, 4:01 a.m.
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Description Usage Arguments Details
View source: R/summarize_homer.R
Description
Parse peak annotations generated by homer annotatePeaks.pl
Usage
1 2 | summarize_homer_annots(anno, sample_names = NULL, plot = TRUE,
legend_font_size = 1, label_size = 0.8)
|
Arguments
anno |
Raw annotations generated by annotatePeaks.pl. |
plot |
If TRUE generates a pie chart for peak distribution |
legend_font_size |
font size for legend. Default 1. |
label_size |
font size for labels. Default 0.8. |
Details
summarizes peak annotations generated with homer annotatePeaks.pl, also a generates a pie chart of peak distributions.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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