ClusterProfiler.GSEA.ORA.customGS.Compare: Perform GSE analysis across multiple group by cluster...
In ProfessionalFarmer/loonR: Common function in bioinformatics analysis
ClusterProfiler.GSEA.ORA.customGS.Compare R Documentation
Perform GSE analysis across multiple group by cluster profiler and user customed gene sets
Description
Perform GSE analysis across multiple group by cluster profiler and user customed gene sets
Usage
ClusterProfiler.GSEA.ORA.customGS.Compare(
gene,
customGS = NULL,
minGSSize = 10,
qvalue = 0.05,
gse = FALSE,
ova = FALSE
)
Arguments
customGS
ClusterProfiler::read.gmt() term to symbols
minGSSize
10
qvalue
0.05
gse
Default FALSE, gene set enrichment analysis
ova
Default FALSE, overrepresentation test
ProfessionalFarmer/loonR documentation built on Oct. 9, 2024, 9:56 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| ClusterProfiler.GSEA.ORA.customGS.Compare | R Documentation |
Perform GSE analysis across multiple group by cluster profiler and user customed gene sets
Description
Perform GSE analysis across multiple group by cluster profiler and user customed gene sets
Usage
ClusterProfiler.GSEA.ORA.customGS.Compare(
gene,
customGS = NULL,
minGSSize = 10,
qvalue = 0.05,
gse = FALSE,
ova = FALSE
)
Arguments
customGS |
ClusterProfiler::read.gmt() term to symbols |
minGSSize |
10 |
qvalue |
0.05 |
gse |
Default FALSE, gene set enrichment analysis |
ova |
Default FALSE, overrepresentation test |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.