ClusterProfiler.GSEA.ORA.customGS: Perform analysis using user custom gene sets
In ProfessionalFarmer/loonR: Common function in bioinformatics analysis
ClusterProfiler.GSEA.ORA.customGS R Documentation
Perform analysis using user custom gene sets
Description
Perform analysis using user custom gene sets
Usage
ClusterProfiler.GSEA.ORA.customGS(
g,
CustomGS = NULL,
gse = FALSE,
ova = FALSE,
minGSSize = 10,
qvalue = 0.05
)
Arguments
g
GSE: values with genes symbols, OVA: symbols
CustomGS
ClusterProfiler::read.gmt() term to symbols
gse
Default FALSE, gene set enrichment analysis
ova
Default FALSE, overrepresentation test
minGSSize
10
qvalue
0.05
ProfessionalFarmer/loonR documentation built on Oct. 9, 2024, 9:56 p.m.
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| ClusterProfiler.GSEA.ORA.customGS | R Documentation |
Perform analysis using user custom gene sets
Description
Perform analysis using user custom gene sets
Usage
ClusterProfiler.GSEA.ORA.customGS(
g,
CustomGS = NULL,
gse = FALSE,
ova = FALSE,
minGSSize = 10,
qvalue = 0.05
)
Arguments
g |
GSE: values with genes symbols, OVA: symbols |
CustomGS |
ClusterProfiler::read.gmt() term to symbols |
gse |
Default FALSE, gene set enrichment analysis |
ova |
Default FALSE, overrepresentation test |
minGSSize |
10 |
qvalue |
0.05 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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